Hi,
It would help a lot if you can provide model of your HU as well. The pic of the amp would also help. But, better if you can provide weblink to the product/s. That way, I can look at the spec first.
Some amps come with built in HPF/LPF. This way, you can set CH1/2 to HPF and CH3/4 to LPF. So, CH 1/2 can be connected to your speakers while CH3/4 are connected to your woofers.
By the way, who did the woofer/amp installation for you? This guy should know what to do. But, in general, you might not need a pre-amp (yet).